Cognitive Modeling of Real-World Behavior for Understanding Mental Health

Mirea, D., Nook, E. C., & Niv, Y. 

PsyArXiv Preprints

doi.org/10.31234/osf.io/z6swk_v1 March 17, 2025

The chromatin landscape of healthy and injured cell types in the human kidney

Gisch DL, Brennan M, Lake BB, Basta J, Keller MS, Melo Ferreira R, Akilesh S, Ghag R, Lu C, Cheng YH, Collins KS, Parikh SV, Rovin BH, Robbins L, Stout L, Conklin KY, Diep D, Zhang B, Knoten A, Barwinska D, Asghari M, Sabo AR, Ferkowicz MJ, Sutton TA, Kelly KJ, De Boer IH, Rosas SE, Kiryluk K, Hodgin JB, Alakwaa F, Winfree S, Jefferson N, Türkmen A, Gaut JP, Gehlenborg N, Phillips CL, El-Achkar TM, Dagher PC, Hato T, Zhang K, Himmelfarb J, Kretzler M, Mollah S; Kidney Precision Medicine Project (KPMP); Jain S, Rauchman M, Eadon MT. 

Nat Commun. 2024 Jan 10.

Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project

El-Achkar TM, Eadon MT, Kretzler M, Himmelfarb J; Kidney Precision Medicine Project. 

Am J Kidney Dis. 2024 Mar.

A benchmarked, high-efficiency prime editing platform for multiplexed dropout screening.

Cirincione A, Simpson D, Ravisankar P, Solley SC, Yan J, Singh M, Adamson B.

bioRxiv 2024

A unified theory for predicting pathogen mutual invasibility and co-circulation

Sang Woo Park, Sarah Cobey, C. Jessica E. Metcalf, Jonathan M. Levine, Bryan T. Grenfell

bioRxiv 2024

Eco-evolutionary dynamics of pathogen immune-escape: deriving a population-level phylodynamic curve

Nielsen, B. F., Saad-Roy, C. M., Metcalf, C. J. E., Viboud, C., & Grenfell, B. T.

bioRxiv 2024

Assessing population-level target product profiles of universal human influenza A vaccines.

Yang Q, Park SW, Saad-Roy CM, Ahmad I, Viboud C, Arinaminpathy N, Grenfell BT. 

Epidemics 2024

The ontogeny of immune tolerance: a model of the early-life gut microbiome and adaptive immunity

Burcu Tepekule, Ai Ing Lim, C. Jessica E. Metcalf

bioRxiv 2024

Inferring COVID-19 testing and vaccination behavior from New Jersey testing data.

Freedman AS, Sheen JK, Tsai S, Yao J, Lifshitz E, Adinaro D, Levin SA, Grenfell BT, Metcalf CJE.  

Proc Natl Acad Sci U S A. 2024 

Child-Driven Parenting: Differential Early Childhood Investment by Offspring Genotype

Breinholt, A. & Conley, D.

Social Forces 2023

Genetic analysis of selection bias in a natural experiment: Investigating in-utero famine effects on elevated body mass index in the Dutch Hunger Winter Families Study

Zhou, J., Indik, C. E., Kuipers, T. B., Li, C., Nivard, M. G., Ryan, C. P., Conley, D., Heijmans BT, Lumey L.H., & Belsky, D. W. (2023).

medRxiv 2023

Accelerated biological aging six decades after prenatal famine exposure.

Mengling Cheng, Dalton Conley, Tom Kuipers, Chihua Li , Calen P Ryan, M Jazmin Taeubert, Shuang Wang, Tian Wang, Jiayi Zhou, Lauren L Schmitz, Elmar W Tobi, Bas Heijmans, L H Lumey, Daniel W Belsky

Proc Natl Acad Sci U S A 2024

Adaptive social decisions are disrupted in highly antagonistic individuals

Yeon Soon Shin, Lauren Wilkins, Jenifer Siegel , Christoph Mathys , Robb B. Rutledge , Kate E. A. Saunders, M. J. Crockett

PsyArXiv  2024

Word meaning is complex: Language-related generalization differences in autistic adults

Cuneo, N., Floyd, S., & Goldberg, A. E

Cognition 2024

Identification of Perturbation-Responsive Regions and Genes in Comparative Spatial Transcriptomics Atlases.

Teo A Y Y , Gautier M,  Brock L,  Tsai, J Y. J., de Coucy A,   Laskaratos  A, Regazzi N, Barraud Q,Sofroniew M V, Anderson M A., Courtine G,Squair J W. and Skinnider M A. 

COVID-19 SARS-CoV-2 Preprints from medRxiv and bioRxiv 2024.

Chromosome-level organization of the regulatory genome in the Drosophila nervous system

Mohana G, Dorier J, Li X, Mouginot M, Smith RC, Malek H, Leleu M, Rodriguez D, Khadka J, Rosa P, Cousin P, Iseli C, Restrepo S, Guex N, McCabe BD, Jankowski A, Levine MS, Gambetta MC

Cell 2023

Depression is associated with higher sensitivity to social media rewards

Dan-Mircea Mirea, Judith N. Mildner, Sean W. Kelley, Claire M. Gillan, Erik C. Nook, and Yael Niv. 

PsyArXiv Preprints. 2024

 

Identification of Emerging Novel Psychoactive Substances by Retrospective Analysis of Population-Scale Mass Spectrometry Data Sets

Skinnider M, Mérette S A M,  Pasin D,  Rogalski J,  Foster L J, Scheuermeyer F, and Shapiro A 

Analytical Chemistry 2023

Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease

Zijun Zhang, Natalie Sauerwald, Antonio Cappuccio, Irene Ramos, Venugopalan D. Nair, German Nudelman, Elena Zaslavsky, Yongchao Ge, Angelo Gaitas, Hui Ren, Joel Brockman, Jennifer Geis, Naveen Ramalingam, David King, Micah T. McClain, Christopher W. Woods, Ricardo Henao, Thomas W. Burke, Ephraim L. Tsalik, Carl W. Goforth, Rhonda A. Lizewski, Stephen E. Lizewski, Dawn L. Weir, Andrew G. Letizia, Stuart C. Sealfon, and Olga G. Troyanskaya

Cell Reports Methods. 2023 Jan.

Polygenic Scores for Plasticity: A New Tool for Studying Gene-Environment Interplay.

Johnson R, Sotoudeh R, Conley D. 

Demography 2022 

Polygenic prediction within and between families from a 3-million-person GWAS of educational attainment.

Okbay A, Wu Y, Wang N, Jayashankar H, Bennett M, Nehzati SM, Sidorenko J, Kweon H, Goldman G, Gjorgjieva T, Jiang Y, Hicks B, Tian C, Hinds DA, Ahlskog R, Magnusson PKE, Oskarsson S, Hayward C, Campbell A, Porteous DJ, Freese J, Herd P; 23andMe Research Team; Social Science Genetic Association Consortium; Watson C, Jala J, Conley D, Koellinger PD, Johannesson M, Laibson D, Meyer MN, Lee JJ, Kong A, Yengo L, Cesarini D, Turley P, Visscher PM, Beauchamp JP, Benjamin DJ, Young AI. Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals.

Nature Genetics 2022

Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection

Natalie Sauerwald, Zijun Zhang, Irene Ramos, Venugopalan D Nair, Alessandra Soares-Schanoski, Yongchao Ge, Weiguang Mao, Hala Alshammary, Ana S Gonzalez-Reiche, Adriana van de Guchte, Carl W Goforth, Rhonda A Lizewski, Stephen E Lizewski, Mary Anne S Amper, Mital Vasoya, Nitish Seenarine, Kristy Guevara, Nada Marjanovic, Clare M Miller, German Nudelman, Megan A Schilling, Rachel S G Sealfon, Michael S Termini, Sindhu Vangeti, Dawn L Weir, Elena Zaslavsky, Maria Chikina, Ying Nian Wu, Harm Van Bakel, Andrew G Letizia, Stuart C Sealfon, and Olga G Troyanskaya

Cell Systems. 2022 Nov 16.